.gitignore

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-
-### JupyterNotebooks ###
-# gitignore template for Jupyter Notebooks
-# website: http://jupyter.org/
-
-.ipynb_checkpoints
-*/.ipynb_checkpoints/*
-
-# IPython
-profile_default/
-ipython_config.py
-
-# Remove previous ipynb_checkpoints
-#   git rm -r .ipynb_checkpoints/
-
-### LaTeX ###
-## Core latex/pdflatex auxiliary files:
-*.aux
-*.lof
-*.log
-*.lot
-*.fls
-*.out
-*.toc
-*.fmt
-*.fot
-*.cb
-*.cb2
-.*.lb
-
-## Intermediate documents:
-*.dvi
-*.xdv
-*-converted-to.*
-# these rules might exclude image files for figures etc.
-# *.ps
-# *.eps
-# *.pdf
-
-## Generated if empty string is given at "Please type another file name for output:"
-.pdf
-
-## Bibliography auxiliary files (bibtex/biblatex/biber):
-*.bbl
-*.bcf
-*.blg
-*-blx.aux
-*-blx.bib
-*.run.xml
-
-## Build tool auxiliary files:
-*.fdb_latexmk
-*.synctex
-*.synctex(busy)
-*.synctex.gz
-*.synctex.gz(busy)
-*.pdfsync
-
-## Build tool directories for auxiliary files
-# latexrun
-latex.out/
-
-## Auxiliary and intermediate files from other packages:
-# algorithms
-*.alg
-*.loa
-
-# achemso
-acs-*.bib
-
-# amsthm
-*.thm
-
-# beamer
-*.nav
-*.pre
-*.snm
-*.vrb
-
-# changes
-*.soc
-
-# comment
-*.cut
-
-# cprotect
-*.cpt
-
-# elsarticle (documentclass of Elsevier journals)
-*.spl
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-# endnotes
-*.ent
-
-# fixme
-*.lox
-
-# feynmf/feynmp
-*.mf
-*.mp
-*.t[1-9]
-*.t[1-9][0-9]
-*.tfm
-
-#(r)(e)ledmac/(r)(e)ledpar
-*.end
-*.?end
-*.[1-9]
-*.[1-9][0-9]
-*.[1-9][0-9][0-9]
-*.[1-9]R
-*.[1-9][0-9]R
-*.[1-9][0-9][0-9]R
-*.eledsec[1-9]
-*.eledsec[1-9]R
-*.eledsec[1-9][0-9]
-*.eledsec[1-9][0-9]R
-*.eledsec[1-9][0-9][0-9]
-*.eledsec[1-9][0-9][0-9]R
-
-# glossaries
-*.acn
-*.acr
-*.glg
-*.glo
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-*.glsdefs
-*.lzo
-*.lzs
-*.slg
-*.slo
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-
-# uncomment this for glossaries-extra (will ignore makeindex's style files!)
-# *.ist
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-# gnuplot
-*.gnuplot
-*.table
-
-# gnuplottex
-*-gnuplottex-*
-
-# gregoriotex
-*.gaux
-*.glog
-*.gtex
-
-# htlatex
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-# hyperref
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-
-# knitr
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-# TODO Uncomment the next line if you use knitr and want to ignore its generated tikz files
-# *.tikz
-*-tikzDictionary
-
-# listings
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-# luatexja-ruby
-*.ltjruby
-
-# makeidx
-*.idx
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-
-# minitoc
-*.maf
-*.mlf
-*.mlt
-*.mtc[0-9]*
-*.slf[0-9]*
-*.slt[0-9]*
-*.stc[0-9]*
-
-# minted
-_minted*
-*.pyg
-
-# morewrites
-*.mw
-
-# newpax
-*.newpax
-
-# nomencl
-*.nlg
-*.nlo
-*.nls
-
-# pax
-*.pax
-
-# pdfpcnotes
-*.pdfpc
-
-# sagetex
-*.sagetex.sage
-*.sagetex.py
-*.sagetex.scmd
-
-# scrwfile
-*.wrt
-
-# svg
-svg-inkscape/
-
-# sympy
-*.sout
-*.sympy
-sympy-plots-for-*.tex/
-
-# pdfcomment
-*.upa
-*.upb
-
-# pythontex
-*.pytxcode
-pythontex-files-*/
-
-# tcolorbox
-*.listing
-
-# thmtools
-*.loe
-
-# TikZ & PGF
-*.dpth
-*.md5
-*.auxlock
-
-# titletoc
-*.ptc
-
-# todonotes
-*.tdo
-
-# vhistory
-*.hst
-*.ver
-
-# easy-todo
-*.lod
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-# xcolor
-*.xcp
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-# xmpincl
-*.xmpi
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-# xindy
-*.xdy
-
-# xypic precompiled matrices and outlines
-*.xyc
-*.xyd
-
-# endfloat
-*.ttt
-*.fff
-
-# Latexian
-TSWLatexianTemp*
-
-## Editors:
-# WinEdt
-*.bak
-*.sav
-
-# Texpad
-.texpadtmp
-
-# LyX
-*.lyx~
-
-# Kile
-*.backup
-
-# gummi
-.*.swp
-
-# KBibTeX
-*~[0-9]*
-
-# TeXnicCenter
-*.tps
-
-# auto folder when using emacs and auctex
-./auto/*
-*.el
-
-# expex forward references with \gathertags
-*-tags.tex
-
-# standalone packages
-*.sta
-
-# Makeindex log files
-*.lpz
-
-# xwatermark package
-*.xwm
-
-# REVTeX puts footnotes in the bibliography by default, unless the nofootinbib
-# option is specified. Footnotes are the stored in a file with suffix Notes.bib.
-# Uncomment the next line to have this generated file ignored.
-#*Notes.bib
-
-### LaTeX Patch ###
-# LIPIcs / OASIcs
-*.vtc
-
-# glossaries
-*.glstex
-
-### Linux ###
-*~
-
-# temporary files which can be created if a process still has a handle open of a deleted file
-.fuse_hidden*
-
-# KDE directory preferences
-.directory
-
-# Linux trash folder which might appear on any partition or disk
-.Trash-*
-
-# .nfs files are created when an open file is removed but is still being accessed
-.nfs*
-
-### macOS ###
-# General
-.DS_Store
-.AppleDouble
-.LSOverride
-
-# Icon must end with two \r
-Icon
-
-
-# Thumbnails
-._*
-
-# Files that might appear in the root of a volume
-.DocumentRevisions-V100
-.fseventsd
-.Spotlight-V100
-.TemporaryItems
-.Trashes
-.VolumeIcon.icns
-.com.apple.timemachine.donotpresent
-
-# Directories potentially created on remote AFP share
-.AppleDB
-.AppleDesktop
-Network Trash Folder
-Temporary Items
-.apdisk
-
-### Python ###
-# Byte-compiled / optimized / DLL files
-__pycache__/
-*.py[cod]
-*$py.class
-
-# C extensions
-*.so
-
-# Distribution / packaging
-.Python
-build/
-develop-eggs/
-dist/
-downloads/
-eggs/
-.eggs/
-lib/
-lib64/
-parts/
-sdist/
-var/
-wheels/
-share/python-wheels/
-*.egg-info/
-.installed.cfg
-*.egg
-MANIFEST
-
-# PyInstaller
-#  Usually these files are written by a python script from a template
-#  before PyInstaller builds the exe, so as to inject date/other infos into it.
-*.manifest
-*.spec
-
-# Installer logs
-pip-log.txt
-pip-delete-this-directory.txt
-
-# Unit test / coverage reports
-htmlcov/
-.tox/
-.nox/
-.coverage
-.coverage.*
-.cache
-nosetests.xml
-coverage.xml
-*.cover
-*.py,cover
-.hypothesis/
-.pytest_cache/
-cover/
-
-# Translations
-*.mo
-*.pot
-
-# Django stuff:
-local_settings.py
-db.sqlite3
-db.sqlite3-journal
-
-# Flask stuff:
-instance/
-.webassets-cache
-
-# Scrapy stuff:
-.scrapy
-
-# Sphinx documentation
-docs/_build/
-
-# PyBuilder
-.pybuilder/
-target/
-
-# Jupyter Notebook
-
-# IPython
-
-# pyenv
-#   For a library or package, you might want to ignore these files since the code is
-#   intended to run in multiple environments; otherwise, check them in:
-# .python-version
-
-# pipenv
-#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
-#   However, in case of collaboration, if having platform-specific dependencies or dependencies
-#   having no cross-platform support, pipenv may install dependencies that don't work, or not
-#   install all needed dependencies.
-#Pipfile.lock
-
-# poetry
-#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
-#   This is especially recommended for binary packages to ensure reproducibility, and is more
-#   commonly ignored for libraries.
-#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
-#poetry.lock
-
-# PEP 582; used by e.g. github.com/David-OConnor/pyflow
-__pypackages__/
-
-# Celery stuff
-celerybeat-schedule
-celerybeat.pid
-
-# SageMath parsed files
-*.sage.py
-
-# Environments
-.env
-.venv
-env/
-venv/
-ENV/
-env.bak/
-venv.bak/
-
-# Spyder project settings
-.spyderproject
-.spyproject
-
-# Rope project settings
-.ropeproject
-
-# mkdocs documentation
-/site
-
-# mypy
-.mypy_cache/
-.dmypy.json
-dmypy.json
-
-# Pyre type checker
-.pyre/
-
-# pytype static type analyzer
-.pytype/
-
-# Cython debug symbols
-cython_debug/
-
-# PyCharm
-#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
-#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
-#  and can be added to the global gitignore or merged into this file.  For a more nuclear
-#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/
-
-### R ###
-# History files
-.Rhistory
-.Rapp.history
-
-# Session Data files
-.RData
-.RDataTmp
-
-# User-specific files
-.Ruserdata
-
-# Example code in package build process
-*-Ex.R
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-# Output files from R CMD build
-/*.tar.gz
-
-# Output files from R CMD check
-/*.Rcheck/
-
-# RStudio files
-.Rproj.user/
-
-# produced vignettes
-vignettes/*.html
-vignettes/*.pdf
-
-# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
-.httr-oauth
-
-# knitr and R markdown default cache directories
-*_cache/
-/cache/
-
-# Temporary files created by R markdown
-*.utf8.md
-*.knit.md
-
-# R Environment Variables
-.Renviron
-
-# pkgdown site
-docs/
-
-# translation temp files
-po/*~
-
-# RStudio Connect folder
-rsconnect/
-
-### R.Bookdown Stack ###
-# R package: bookdown caching files
-/*_files/
-
-### VisualStudioCode ###
-.vscode/*
-!.vscode/settings.json
-!.vscode/tasks.json
-!.vscode/launch.json
-!.vscode/extensions.json
-!.vscode/*.code-snippets
-
-# Local History for Visual Studio Code
-.history/
-
-# Built Visual Studio Code Extensions
-*.vsix
-
-### VisualStudioCode Patch ###
-# Ignore all local history of files
-.history
-.ionide
-
-# Support for Project snippet scope
-
-### Windows ###
-# Windows thumbnail cache files
-Thumbs.db
-Thumbs.db:encryptable
-ehthumbs.db
-ehthumbs_vista.db
-
-# Dump file
-*.stackdump
-
-# Folder config file
-[Dd]esktop.ini
-
-# Recycle Bin used on file shares
-$RECYCLE.BIN/
-
-# Windows Installer files
-*.cab
-*.msi
-*.msix
-*.msm
-*.msp
-
-# Windows shortcuts
-*.lnk
-
-# Dataset
-tp/clustering/mars/*.csv
-tp/clustering/mars/*.zip
-tp/clustering/ensemble/images/
-tp/clustering/ensemble/representations/

tp/clustering/ensemble/data.txt

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-To download the FEI dataset and the corresponding extracted CNN feature representations, used in the Ensemble clustering hands-on, please use the following link:
-
-The representations are .h5 files (read using h5py)
-Each .h5 representation file contains:
- - a "data" key (containing the features)
- - a "labels" key (containing the corresponding ground truth)